Node 62
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	1	0	G	1
6	0.95	0.01	0.03	0	A	0.95
7	1	0	0	0	A	1
8	0	0	0	1	T	1
9	0	0.15	0	0.84	T	0.84
10	0	0.98	0	0.01	C	0.98
11	0	0	0	1	T	1
12	0	1	0	0	C	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0.03	0	0.96	T	0.96
16	1	0	0	0	A	1
17	1	0	0	0	A	1
18	0	0.88	0	0.12	C	0.88
19	0	0.03	0	0.97	T	0.97
20	0	0	0	1	T	1
21	0.97	0	0.03	0	A	0.97
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.87	0	0.13	0	A	0.87
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	0.04	0	0.96	0	G	0.96
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.53	0	0.47	C	0.53
31	0.64	0.35	0.01	0	A	0.64
32	0.88	0	0.12	0	A	0.88
33	0.04	0	0.96	0	G	0.96
34	0	0.96	0.01	0.02	C	0.96
35	0.97	0	0.02	0	A	0.97
36	0.07	0.01	0.92	0	G	0.92
37	0.08	0.02	0.9	0	G	0.9
38	0	0	0	1	T	1
39	0	0.06	0	0.94	T	0.94
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.31	0	0.68	T	0.68
43	0	1	0	0	C	1
44	0.6	0.21	0.18	0	A	0.6
45	0	0.69	0	0.31	C	0.69
46	0.75	0.01	0.08	0.16	A	0.75
47	0.12	0.26	0.61	0.01	G	0.61
48	0	0.86	0	0.13	C	0.86
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.5	0.15	0.13	0.23	A	0.5
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0.03	0.83	0.07	0.06	C	0.83
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	0.98	0	0.02	0	A	0.98
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0	1	0	0	C	1
62	1	0	0	0	A	1
63	0.01	0	0.99	0	G	0.99
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0.99	0	0.01	C	0.99
70	0.1	0	0.9	0	G	0.9
71	0	0	0	1	T	1
72	0.13	0.04	0.62	0.21	G	0.62
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.04	0.61	0.23	0.12	C	0.61
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0.66	0	0.34	C	0.66
82	0.93	0	0.07	0	A	0.93
83	1	0	0	0	A	1
84	0.23	0.29	0.09	0.39	T	0.39
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.93	0	0.07	C	0.93
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	0.99	0	0.01	C	0.99
91	0	0	1	0	G	1
92	1	0	0	0	A	1
93	0	0.95	0	0.05	C	0.95
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.97	0	0.03	C	0.97
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	0.97	0	0.03	C	0.97
100	0	0.99	0	0	C	0.99
101	0.83	0	0.17	0	A	0.83
102	0.05	0.09	0.84	0.01	G	0.84
103	0	1	0	0	C	1
104	0	1	0	0	C	1
105	0.05	0.55	0.25	0.16	C	0.55
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.06	0.02	0.9	0.01	G	0.9
112	0	0	1	0	G	1
113	0	1	0	0	C	1
114	0.01	0.15	0.82	0.02	G	0.82
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.52	0	0.48	C	0.52
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.01	0.88	0.06	0.05	C	0.88
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0.56	0	0.44	C	0.56
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.62	0	0.38	C	0.62
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.3	0.01	0.66	0.02	G	0.66
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0.08	0	0.87	0.05	G	0.87
137	0	1	0	0	C	1
138	0.01	0.85	0.02	0.13	C	0.85
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.05	0	0.95	T	0.95
142	0	1	0	0	C	1
143	0	0	1	0	G	1
144	0	0.99	0	0.01	C	0.99
145	0	0	1	0	G	1
146	0	0	0	1	T	1
147	0.01	0	0.98	0	G	0.98
148	0.02	0	0.98	0	G	0.98
149	0.98	0.01	0	0	A	0.98
150	0.67	0.06	0.26	0.02	A	0.67
151	0.97	0	0.03	0	A	0.97
152	0	0.99	0	0	C	0.99
153	0.05	0.77	0.08	0.1	C	0.77
154	0	0	1	0	G	1
155	1	0	0	0	A	1
156	0	0.88	0	0.11	C	0.88
157	0.93	0.01	0.05	0.01	A	0.93
158	0.02	0.81	0.14	0.03	C	0.81
159	0	0.89	0	0.1	C	0.89
160	0.96	0	0.04	0	A	0.96
161	0	0.99	0	0	C	0.99
162	0.06	0.43	0.45	0.06	G	0.45
163	0	0	0	0	-	0
164	0	0	0	0	-	0
165	0	0	0	0	-	0
166	0.98	0	0.01	0	A	0.98
167	0	1	0	0	C	1
168	0.01	0.95	0.01	0.04	C	0.95
169	0	0	1	0	G	1
170	1	0	0	0	A	1
171	0	0.5	0	0.49	C	0.5
172	0	0	1	0	G	1
173	0	1	0	0	C	1
174	0.04	0	0.95	0	G	0.95
175	0	1	0	0	C	1
176	0	0	0	1	T	1
177	0.02	0	0.98	0	G	0.98
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.54	0	0.46	C	0.54
181	0	0	1	0	G	1
182	0	0.02	0	0.98	T	0.98
183	0	0.98	0	0.02	C	0.98
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0.02	0.77	0.06	0.15	C	0.77
187	0.24	0.75	0	0	C	0.75
188	1	0	0	0	A	1
189	0	0.6	0	0.4	C	0.6
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.98	0	0.02	C	0.98
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.93	0	0.07	C	0.93
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.68	0	0.32	C	0.68
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.19	0	0.81	T	0.81
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.13	0.01	0.85	0.01	G	0.85
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0.15	0	0.85	T	0.85
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.03	0	0.96	0	G	0.96
220	0	1	0	0	C	1
221	1	0	0	0	A	1
222	0.06	0	0.94	0	G	0.94
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.13	0.05	0.79	0.03	G	0.79
226	0	0.95	0.02	0.03	C	0.95
227	0.99	0	0	0	A	0.99
228	0.03	0	0.97	0	G	0.97
229	0	1	0	0	C	1
230	1	0	0	0	A	1
231	0.76	0	0.24	0	A	0.76
232	1	0	0	0	A	1
233	0.99	0	0	0	A	0.99
234	0.97	0	0.02	0	A	0.97
235	1	0	0	0	A	1
236	0	0	0	1	T	1
237	0	0.07	0	0.92	T	0.92
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.24	0	0.76	0	G	0.76
241	0	0	0	1	T	1
242	0.2	0	0	0.8	T	0.8
243	0	0.19	0	0.81	T	0.81
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.03	0.72	0.19	0.05	C	0.72
247	0.02	0.02	0.95	0.01	G	0.95
248	0	0.98	0	0.02	C	0.98
249	0.02	0.77	0.06	0.14	C	0.77
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.12	0	0.88	0	G	0.88
254	0.81	0.04	0.14	0.01	A	0.81
255	0.12	0.3	0.38	0.19	G	0.38
256	0.29	0.52	0.16	0.02	C	0.52
257	0.91	0.05	0.03	0.01	A	0.91
258	0.04	0	0.94	0.01	G	0.94
259	0	0.98	0	0.02	C	0.98
260	0	0	0	1	T	1
261	0.03	0	0.97	0	G	0.97
262	0	1	0	0	C	1
263	0.97	0	0.02	0	A	0.97
264	0.07	0	0.92	0	G	0.92
265	0.55	0.02	0.43	0.01	A	0.55
266	0	0.66	0	0.34	C	0.66
267	0.14	0.12	0.72	0.02	G	0.72
268	0	0	1	0	G	1
269	0	0	0	1	T	1
270	0.05	0.07	0.84	0.04	G	0.84
271	0.01	0	0.99	0	G	0.99
272	0.98	0.01	0	0	A	0.98
273	0.18	0.07	0.74	0.02	G	0.74
274	0	0	0	0.99	T	0.99
275	0.02	0	0.98	0	G	0.98
276	0	0.78	0	0.22	C	0.78
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.65	0	0.35	C	0.65
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0	0.98	0	0.02	C	0.98
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.14	0	0.86	T	0.86
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.97	0	0.03	C	0.97
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.54	0	0.46	C	0.54
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0.01	0.77	0.02	0.21	C	0.77
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	0.96	0	0.04	0	A	0.96
301	0	0	0	1	T	1
302	1	0	0	0	A	1
303	0	0.84	0	0.16	C	0.84
304	0	0.99	0	0.01	C	0.99
305	0	0	0	1	T	1
306	0.01	0	0.98	0	G	0.98
307	1	0	0	0	A	1
308	1	0	0	0	A	1
309	0.87	0.01	0.12	0.01	A	0.87
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.92	0.01	0.07	C	0.92
313	0.36	0.1	0.06	0.48	T	0.48
314	0.13	0.01	0.62	0.25	G	0.62
315	0.01	0.94	0.01	0.05	C	0.94
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.05	0.12	0.01	0.82	T	0.82
322	0.01	0	0.99	0	G	0.99
323	1	0	0	0	A	1
324	0.81	0.11	0.04	0.04	A	0.81
325	1	0	0	0	A	1
326	0	1	0	0	C	1
327	0	0.95	0.01	0.03	C	0.95
328	0	0	1	0	G	1
329	0	0	0	0.99	T	0.99
330	0.04	0	0.95	0.01	G	0.95
331	0.01	0.98	0.01	0.01	C	0.98
332	1	0	0	0	A	1
333	0.02	0	0.98	0	G	0.98
334	0	0	0.99	0	G	0.99
335	0	0	0	1	T	1
336	0.06	0.11	0.61	0.23	G	0.61
337	0	0.99	0	0.01	C	0.99
338	0.98	0	0.02	0	A	0.98
339	0	0.96	0	0.03	C	0.96
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	0.98	0	0.02	0	A	0.98
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.24	0.1	0.63	0.03	G	0.63
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.07	0	0.93	0	G	0.93
349	0.99	0	0.01	0	A	0.99
350	0	0	0	1	T	1
351	0.01	0	0.99	0	G	0.99
352	0	0	1	0	G	1
353	0	0	0	1	T	1
354	0.06	0.01	0.9	0.03	G	0.9
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0.01	0	0.99	T	0.99
358	0	0	0	1	T	1
359	0	0	1	0	G	1
360	0	0.94	0	0.06	C	0.94
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0.01	0.54	0.01	0.44	C	0.54
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0.14	0.39	0.44	0.03	G	0.44
368	1	0	0	0	A	1
369	0	0.6	0	0.4	C	0.6
370	0	0	1	0	G	1
371	1	0	0	0	A	1
372	0.87	0	0.13	0	A	0.87
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0.01	0.89	0.01	0.09	C	0.89
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.81	0	0.19	C	0.81
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0.03	0	0.97	T	0.97
385	0.99	0	0.01	0	A	0.99
386	0	0.01	0	0.99	T	0.99
387	0	1	0	0	C	1
388	0.08	0.01	0.03	0.89	T	0.89
389	0	0	1	0	G	1
390	0	0.72	0	0.28	C	0.72
391	0.01	0	0.99	0	G	0.99
392	1	0	0	0	A	1
393	0	0.27	0	0.72	T	0.72
394	0.19	0	0.81	0	G	0.81
395	0.66	0.33	0.01	0	A	0.66
396	0	0.99	0	0	C	0.99
397	0	0.99	0.01	0	C	0.99
398	0	0.99	0	0	C	0.99
399	0.2	0.01	0.78	0.01	G	0.78
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.6	0.01	0.38	0.01	A	0.6
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	1	0	0	0	A	1
411	0.95	0	0.04	0	A	0.95
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0.03	0.4	0.55	0.02	G	0.55
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0.25	0	0.75	0	G	0.75
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0	0.98	0	0.01	C	0.98
424	1	0	0	0	A	1
425	0.93	0	0.07	0	A	0.93
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.06	0.41	0.48	0.05	G	0.48
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	0.95	0	0.04	C	0.95
433	0.99	0	0.01	0	A	0.99
434	0	0	0	1	T	1
435	0	0.6	0	0.4	C	0.6
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0.95	0	0.05	C	0.95
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	0.1	0	0.9	T	0.9
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.07	0	0.93	T	0.93
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	0.98	0	0.02	C	0.98
451	0	1	0	0	C	1
452	0.03	0	0	0.96	T	0.96
453	0.08	0.14	0.33	0.45	T	0.45
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.6	0	0.4	C	0.6
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	0.91	0	0.09	0	A	0.91
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGAGAATTCTCGATAACTTAGAACAGTTCAAGCAGGTTTATCACAGCGGACGCAAATGGCAGCGCTGCGTGGAAGCCATCAATAACATCGACAACATCCAGCCCGGCGTGGCGCACTCCATCGGCGATTCGCTGGCCTATCGCGTGGAAACCGACACCACG---ACCGACGCGCTGTTCGTCGGCCACCGCCGCTACTTTGAGGTGCATTACTACCTGCAGGGGCAGCAAAAAATTGAGTTTGCCGCCAAAGAGCAGCTGCAGACGGTGGAGTGCTACCGCGATGAAACCGACCGCGAATACCTGAAAGGCTGC---GGTGAAACCGTGCAGGTGCACGAAGGGCAGATGGTGATTTGCGACAACGACGAAGCCTACCGCTTTATCTGCGATGACCCGGTA------AAAAAAGTGGTGCTCAAAGTGACCATCGAAGACGGTTATTTCCTTAACAAATAA

The most probable DNA sequence without gaps is:
ATGAGAATTCTCGATAACTTAGAACAGTTCAAGCAGGTTTATCACAGCGGACGCAAATGGCAGCGCTGCGTGGAAGCCATCAATAACATCGACAACATCCAGCCCGGCGTGGCGCACTCCATCGGCGATTCGCTGGCCTATCGCGTGGAAACCGACACCACGACCGACGCGCTGTTCGTCGGCCACCGCCGCTACTTTGAGGTGCATTACTACCTGCAGGGGCAGCAAAAAATTGAGTTTGCCGCCAAAGAGCAGCTGCAGACGGTGGAGTGCTACCGCGATGAAACCGACCGCGAATACCTGAAAGGCTGCGGTGAAACCGTGCAGGTGCACGAAGGGCAGATGGTGATTTGCGACAACGACGAAGCCTACCGCTTTATCTGCGATGACCCGGTAAAAAAAGTGGTGCTCAAAGTGACCATCGAAGACGGTTATTTCCTTAACAAATAA

The accuracy score for that sequence is 0.931111111111112

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 2.84645476809709e-17.
The natural log of that probability is -38.0978723019736.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
R	0.98	S	0.01	98	
I	0.99	A	0	9999	
L	0.98	F	0.01	98	
D	0.99	A	0	9999	
N	1	A	0	9999	
L	1	A	0	9999	
E	1	A	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
K	0.5632	Q	0.308	1.82857142857143	
Q	0.921888	X	0.019234	47.9301237392118	
V	0.9	I	0.08	11.25	
Y	0.99	A	0	9999	
H	0.6	P	0.21	2.85714285714286	
S	0.494109	T	0.19305	2.55948717948718	
G	1.01	A	0	9999	
R	0.99	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
Q	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.9	M	0.062	14.5161290322581	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
N	0.6324	K	0.2976	2.125	
N	1	A	0	9999	
I	1	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
I	1	A	0	9999	
Q	0.731313	R	0.166617	4.38918597742127	
P	1.01	A	0	9999	
G	1	A	0	9999	
V	0.99	A	0	9999	
A	1	R	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	1	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	0.99	A	0	9999	
L	1	A	0	9999	
A	0.8787	T	0.0808	10.875	
Y	1	A	0	9999	
R	1	A	0	9999	
V	0.99	A	0	9999	
E	0.893172	D	0.076832	11.625	
T	0.9603	A	0.0297	32.3333333333333	
D	0.99	A	0	9999	
T	0.745767	S	0.136917	5.4468546637744	
T	0.9504	A	0.0396	24	
	0	-	0	0
T	0.9898	A	0.0101	98	
D	0.99	A	0	9999	
A	0.99	R	0	9999	
L	1	A	0	9999	
F	1	A	0	9999	
V	0.98	A	0.02	49	
G	1	A	0	9999	
H	0.75	N	0.24	3.125	
R	1	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
E	0.98	D	0.02	49	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	0.99	A	0	9999	
Q	1	A	0	9999	
G	1	A	0	9999	
Q	0.9405	X	0.0297	31.6666666666667	
Q	1	A	0	9999	
K	0.9801	A	0	9999	
I	0.99	A	0	9999	
E	1	A	0	9999	
F	0.8	Y	0.2	4	
A	0.99	R	0	9999	
A	0.92169	P	0.019404	47.5	
K	1	A	0	9999	
E	0.3564	D	0.349272	1.02040816326531	Unreliable
Q	0.463736	K	0.258622	1.79310344827586	
L	1	A	0	9999	
Q	0.9603	R	0.0198	48.5	
T	0.363	A	0.2838	1.27906976744186	Unreliable
V	1	A	0	9999	
E	0.892584	D	0.087318	10.2222222222222	
C	0.9702	Y	0.0198	49	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1.01	A	0	9999	
E	1	A	0	9999	
Y	1	A	0	9999	
L	0.99	A	0	9999	
K	0.99	N	0.02	49.5	
G	1	A	0	9999	
C	0.294624	S	0.225816	1.3047082580508	Unreliable
	0	-	0	0
G	1	A	0	9999	
E	0.8415	D	0.1485	5.66666666666667	
T	0.99	A	0	9999	
V	0.99	A	0	9999	
Q	0.98	E	0.01	98	
V	0.9999	A	0	9999	
H	0.960498	R	0.019602	49	
E	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
M	0.9801	V	0.01	98.01	
V	1	A	0	9999	
I	1	A	0	9999	
C	1	A	0	9999	
D	0.98	E	0.02	49	
N	1	A	0	9999	
D	0.44	H	0.39	1.12820512820513	Unreliable
E	1	A	0	9999	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
I	0.9801	T	0.0099	99	
C	0.89	S	0.08	11.125	
D	0.9801	N	0.0099	99	
D	0.529254	A	0.264627	2	
P	0.9801	A	0.0099	99	
V	1	A	0	9999	
	0	-	0	0
	0	-	0	0
K	0.99	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	0.99	A	0	9999	
K	0.93	R	0.07	13.2857142857143	
V	1	A	0	9999	
T	0.99	A	0	9999	
I	0.99	V	0.01	99	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
L	0.96	H	0.0177	54.2372881355932	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MRILDNLEQFKQVYHSGRKWQRCVEAINNIDNIQPGVAHSIGDSLAYRVETDTT-TDALFVGHRRYFEVHYYLQGQQKIEFAAKEQLQTVECYRDETDREYLKGC-GETVQVHEGQMVICDNDEAYRFICDDPV--KKVVLKVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MRILDNLEQFKQVYHSGRKWQRCVEAINNIDNIQPGVAHSIGDSLAYRVETDTTTDALFVGHRRYFEVHYYLQGQQKIEFAAKEQLQTVECYRDETDREYLKGCGETVQVHEGQMVICDNDEAYRFICDDPVKKVVLKVTIEDGYFLNKX

The accuracy score for that sequence is 0.946838233333333

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 2.3297533371783e-05
The natural log of that probability is -10.6671630668686.

